CMap Originally created for
the Gramene project, CMap is a web-based genetic and comparative map
visualizer. It is now part of the Generic
Model Organism Database (GMOD) project, and is freely available
from Sourceforge.net.
Generic
Search Page Framework
This package consists of WebForm::SearchPage and WebForm::ParamField
Perl modules, which are used to represent web search pages running on
top of a relational database. This framework can be used to write
search pages that query a database, independent of the database
schema. The modules provide common functionality typically needed for
search pages, reducing development time and standardizing interfaces.
Look-Align
Alignment Viewer
This is an interactive web-based application for displaying
pre-computed multiple sequence alignments. Software is written in Perl
and uses readily available open-source components. It supports data
retrieval from GDPDM-based MySQL databases or flat files.
SQL::Translator
SQL::Translator was created while working on CMap as a means to
translate a MySQL schema to Oracle, PostgreSQL and Sybase. It has
since grown into a healthy, open-source project with 20 developers
actively working on new functionality. SQL::Translator is freely
available on the Comprehensive Perl
Archive Network (CPAN).
Text::RecordParser
This module was also created while writing CMap as a simple way to
parse delimited text files. The code is freely available on CPAN.
Bio::GenBankParser
A Parse::RecDescent-based grammar parser for GenBank records. Very flexible
and extensible.
