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Welcome to the Ware Lab Wiki

Contents

People

Projects

Documents

Administrative

Group Meetings

Group Meetings

Ware Meetings

Date
Every Thursday in James Library
Time
10:00 am, Eastern Daylight Time (GMT -04:00, New York)
Meeting Number
790 071 880
Meeting Password
123456

To join the online meeting:

  1. Go to [1]
  2. Enter your name and email address.
  3. Enter the meeting password: 123456
  4. Click "Join Now".

Dial in:

  • US/Canada Dial In Number: 1.888.272.7337
  • UK Dial In Number: 08004049481
  • Conference ID#: 8795119

Conferences and Workshops

Publications

  • Published
  • Plant Compara paper (submission target Q1 2009) Spooner need update
  • Maize BAC Genome Paper
  • SQL::Translator: A tool for SQL schema manipulation (sumbission target June 2008 Bioinformatics or BMC bioinformatics) Clark
  • CMap: A generic comparative mapping application for the Internet (Submision target Dec 2008 Bioinformatics, application note )Clark Reference update
  • Accelerated region of Maize data analysis in place, figured defined by the group. (Submission target end May 2008)Maize Sequence consortium **Stein/Pasternak CSHL draft to be submitted Friday to the group ** Target date end of September new target date middle of Nov With Wing Group unsure of process
  • Sorghum microRNA analysis (Submission target end of May 2008 Genome Research) Klein collaboration Zhang
    • Target date Sept. 17. change in Target date Nov. 30
  • Evidence based gene build in plant genomes (Submission target end of May with accelerated region Maize paper)
    • Returned for revision on March 4, 2009, mostly for wording changes, with some data addition
    • In revisions with GR May 2009
  • Large-scale enrichment and discovery of gene-associated SNPs, Michael A. Gore1,9,10, Mark H. Wright2,9,10, Elhan S. Ersoz3, Pascal Bouffard4, Edward S. Szekeres4, Thomas P. Jarvie4, Bonnie L. Hurwitz5, Apurva Narechania5, Timothy T. Harkins6, George S. Grills7, Doreen H. Ware5,8, Edward S. Buckler
    • Submitted to Nature Methods, rejected, Submitted to Plant Genome accepted 4/1/09
  • Grape diversity paper based on short reads from 17 diverse cultivars and wild vitis
    • Target submission end April 09, moved to end of May 09
  • Maize Haplotype Map of NAM population founders.
    • Target submission mid May 09, changed to mid June
  • Maize miRNA paper.
    • Target submission mid May 09, change mid June Lifang, Jer-Ming, Sunita, Josh, Zhijie
  • Sorghum miRNA paper.
    • Target submission end of May 09, need to evaluate content and Journal, Lifang, Jer-Ming, Sunita, Josh, Zhijie, Arun, Trish.
  • DGE analysis using the maize genome (Detailed outline target beginning of June, Draft paper target July)
    • Andrea L. Eveland, Namiko Satoh-Nagasawa, Mary Beatty, Hajime Sakai, Doreen Ware, David Jackson.

Publications previously rejected

  • HTML::GMap—A High-Level Perl Wrapper around the Google Maps API (revisions in progress target May 30, 2008 Bioinformatics if rejected to BMC informatics) Canaran
    • Need to discuss new submission to BMC informatics? or leave as a CPAN module not publication submitted.
  • maize and sorghum miRNA evolution and expression (resubmit to May 2008 to Evolutionary and Molecular Biology) Davis collaboration Maher
    • Doreen working, this needs to be submitted before sorghum microRNA paper to Genome research.

Communication and Review

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