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Welcome to the Ware Lab Wiki

Contents

People

Projects

Documents

Administrative

Group Meetings

Group Meetings

Stein/Ware Meetings

Date
Every Tuesday, from Tuesday, June 17, 2008 to no end date
Time
10:00 am, Eastern Daylight Time (GMT -04:00, New York)
Meeting Number
790 071 880
Meeting Password
123456

To join the online meeting:

  1. Go to [1]
  2. Enter your name and email address.
  3. Enter the meeting password: 123456
  4. Click "Join Now".

Dial in:

  • US/Canada Dial In Number: 1.888.272.7337
  • UK Dial In Number: 08004049481
  • Conference ID#: 8795119

Conferences and Workshops

Publications

  • Plant Compara paper (submission target Q1 2009) Spooner
  • HTML::GMap—A High-Level Perl Wrapper around the Google Maps API (revisions in progress target May 30, 2008 Bioinformatics if rejected to BMC informatics) Canaran
    • Need to discuss new submission to BMC informatics? or leave as a CPAN module not publication submitted.
  • maize and sorghum miRNA evolution and expression (resubmit to May 2008 to Evolutionary and Molecular Biology) Davis collaboration Maher
    • Doreen working, this needs to be submitted before sorghum microRNA paper to Genome research.
  • K-mer frequencies as a universal tool to annotate large repetitive plant genomes (submit this May 18 2008 BME Genomics)Kurtz collaboration Narechania
    • Submitted waiting to hear from peer review.
    • Received reviewers comments, minor, Josh, Apurva and Stefan will update, hope to resubmit next week. Accepted
  • SQL::Translator: A tool for SQL schema manipulation (sumbission target June 2008 Bioinformatics or BMC bioinformatics) Clark
  • CMap: A generic comparative mapping application for the Internet (Submision target Dec 2008 Bioinformatics, application note )Clark Doreen to review and cut content to application note format
  • Accelerated region of Maize data analysis in place, figured defined by the group. (Submission target end May 2008)Maize Sequence consortium **Stein/Pasternak CSHL draft to be submitted Friday to the group ** Target date end of September new target date middle of Nov
  • Low-pass shotghun sequencing of barley gneome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats 115(Submission target May 18 2008 BMC Genomics) Nils Stein IPK collaboration Stein/Narechania (submitted)
    • Accepted
  • Using high-throughput sequence data to untangle the complex history of rice (Submission target May 25 2008 ?)OMAP collaboration Hurwitz
    • Submitted waiting to hear from reviewers
  • Large-scale enrichment and discovery of gene-associated SNPs (Submission target May 20 2008 Nature Methods) MSM collaboration
    • Submitted or close
  • Sorghum genome analysis microRNA component (submission to Nature 2008 target end of May) JGI collaboration Narechania/Maher/Zhang
    • Submitted 8/2008
    • Received Reviews, looks positive need some modifications, still moving forward, no work required on our end at this time until submission, preliminary acceptance minor motifications, Lifang reviewed
  • Sorghum microRNA analysis (Submission target end of May 2008 Genome Research) Klein collaboration Zhang
    • Target date Sept. 17. change in Target date Nov. 30
  • Evidence based gene build in plant genomes (Submission target end of May with accelerated region Maize paper) Liang Target date end of September, final draft ready to submit Nov. 1 to Genome Research, Please provide 115

Communication and Review

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